Detailed information of SNP:
|
SNP ID:
sf0610790450(Gbrowse)
Chromosome: chr06 Position: 10790450 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 72.57% | 27.43% |
| All Indica | 799 | 73.84% | 26.16% |
| All Japonica | 497 | 67.40% | 32.60% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 62.91% | 37.09% |
| Indica Intermediate | 211 | 47.39% | 52.61% |
| Temperate Japonica | 335 | 54.63% | 45.37% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610790450 | G->A | INTERGENIC | None |