Detailed information of SNP:
|
SNP ID:
sf0610791533(Gbrowse)
Chromosome: chr06 Position: 10791533 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 87.82% | 12.18% |
| All Indica | 781 | 80.15% | 19.85% |
| All Japonica | 489 | 98.98% | 1.02% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 359 | 72.98% | 27.02% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 209 | 85.17% | 14.83% |
| Temperate Japonica | 330 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610791533 | C->T | LOC_Os06g18970(LOC_Os06g18970.1) | INTRON |