Detailed information of SNP:
|
SNP ID:
sf0610792739(Gbrowse)
Chromosome: chr06 Position: 10792739 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 67.91% | 32.09% |
| All Indica | 799 | 65.96% | 34.04% |
| All Japonica | 497 | 66.80% | 33.20% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 79.73% | 20.27% |
| Indica II | 213 | 62.44% | 37.56% |
| Indica Intermediate | 211 | 45.02% | 54.98% |
| Temperate Japonica | 335 | 54.33% | 45.67% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610792739 | G->T | LOC_Os06g18970(LOC_Os06g18970.1) | INTRON |