Detailed information of SNP:
|
SNP ID:
sf0610800631(Gbrowse)
Chromosome: chr06 Position: 10800631 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 57.42% | 42.58% |
| All Indica | 790 | 31.90% | 68.10% |
| All Japonica | 491 | 92.87% | 7.13% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 25.33% | 74.67% |
| Indica II | 213 | 39.91% | 60.09% |
| Indica Intermediate | 202 | 35.64% | 64.36% |
| Temperate Japonica | 330 | 94.85% | 5.15% |
| Tropical Japonica | 93 | 88.17% | 11.83% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610800631 | T->C | INTERGENIC | None |