Detailed information of SNP:
|
SNP ID:
sf0610801240(Gbrowse)
Chromosome: chr06 Position: 10801240 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 88.12% | 11.88% |
| All Indica | 783 | 80.97% | 19.03% |
| All Japonica | 492 | 99.19% | 0.81% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 199 | 74.87% | 25.13% |
| Indica Intermediate | 209 | 57.89% | 42.11% |
| Temperate Japonica | 332 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610801240 | T->C | INTERGENIC | None |