Detailed information of SNP:
SNP ID:
sf0610801658(Gbrowse)
Chromosome: chr06 Position: 10801658 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1411 | 93.83% | 6.17% |
All Indica | 791 | 90.01% | 9.99% |
All Japonica | 497 | 98.79% | 1.21% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.20% | 0.80% |
Indica II | 213 | 91.08% | 8.92% |
Indica Intermediate | 203 | 71.92% | 28.08% |
Temperate Japonica | 335 | 98.81% | 1.19% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 97.06% | 2.94% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0610801658 | T->C | INTERGENIC | None |