Detailed information of SNP:
|
SNP ID:
sf0610802039(Gbrowse)
Chromosome: chr06 Position: 10802039 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 69.13% | 30.87% |
| All Indica | 799 | 66.21% | 33.79% |
| All Japonica | 484 | 70.45% | 29.55% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 79.73% | 20.27% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 211 | 44.55% | 55.45% |
| Temperate Japonica | 322 | 59.01% | 40.99% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610802039 | T->G | LOC_Os06g18980(LOC_Os06g18980.1) | UTR_5_PRIME |