Detailed information of SNP:
|
SNP ID:
sf0610802296(Gbrowse)
Chromosome: chr06 Position: 10802296 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1385 | 95.45% | 4.55% |
| All Indica | 780 | 92.69% | 7.31% |
| All Japonica | 485 | 99.18% | 0.82% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 368 | 99.46% | 0.54% |
| Indica II | 203 | 99.51% | 0.49% |
| Indica Intermediate | 209 | 74.16% | 25.84% |
| Temperate Japonica | 327 | 99.08% | 0.92% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610802296 | T->G | LOC_Os06g18980(LOC_Os06g18980.1) | Non-Synonymous SNP |