Detailed information of SNP:
|
SNP ID:
sf0610807090(Gbrowse)
Chromosome: chr06 Position: 10807090 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 83.91% | 16.09% |
| All Indica | 797 | 75.16% | 24.84% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 91.71% | 8.29% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 210 | 57.14% | 42.86% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610807090 | G->T | LOC_Os06g18990(LOC_Os06g18990.1) | Synonymous |