Detailed information of SNP:
|
SNP ID:
sf0610807855(Gbrowse)
Chromosome: chr06 Position: 10807855 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 57.48% | 42.52% |
| All Indica | 798 | 93.86% | 6.14% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610807855 | A->G | LOC_Os06g18990(LOC_Os06g18990.1) | Synonymous |