Detailed information of SNP:
|
SNP ID:
sf0610812891(Gbrowse)
Chromosome: chr06 Position: 10812891 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 90.05% | 9.95% |
| All Indica | 798 | 84.59% | 15.41% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 91.18% | 8.82% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 70.62% | 29.38% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610812891 | C->T | LOC_Os06g19010(LOC_Os06g19010.1) | Synonymous |