Detailed information of SNP:
|
SNP ID:
sf0610812942(Gbrowse)
Chromosome: chr06 Position: 10812942 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 89.27% | 10.73% |
| All Indica | 799 | 84.48% | 15.52% |
| All Japonica | 495 | 97.98% | 2.02% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610812942 | T->C | LOC_Os06g19010(LOC_Os06g19010.1) | Synonymous |