Detailed information of SNP:
|
SNP ID:
sf0610828285(Gbrowse)
Chromosome: chr06 Position: 10828285 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 86.27% | 13.73% |
| All Indica | 761 | 79.89% | 20.11% |
| All Japonica | 494 | 96.56% | 3.44% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 372 | 88.44% | 11.56% |
| Indica II | 182 | 74.18% | 25.82% |
| Indica Intermediate | 207 | 69.57% | 30.43% |
| Temperate Japonica | 333 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610828285 | C->T | LOC_Os06g19040(LOC_Os06g19040.1) | Non-Synonymous SNP |