Detailed information of SNP:
|
SNP ID:
sf0610831092(Gbrowse)
Chromosome: chr06 Position: 10831092 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1364 | 55.43% | 44.57% |
| All Indica | 748 | 21.93% | 78.07% |
| All Japonica | 494 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 355 | 9.86% | 90.14% |
| Indica II | 210 | 40.95% | 59.05% |
| Indica Intermediate | 183 | 23.50% | 76.50% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610831092 | C->A | LOC_Os06g19050(LOC_Os06g19050.1) | INTRON |