Detailed information of SNP:
|
SNP ID:
sf0610842264(Gbrowse)
Chromosome: chr06 Position: 10842264 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 54.53% | 45.47% |
| All Indica | 797 | 90.34% | 9.66% |
| All Japonica | 496 | 3.43% | 96.57% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 209 | 77.03% | 22.97% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 7.53% | 92.47% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610842264 | C->A | INTERGENIC | None |