Detailed information of SNP:
|
SNP ID:
sf0610845323(Gbrowse)
Chromosome: chr06 Position: 10845323 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 55.25% | 44.75% |
| All Indica | 799 | 91.24% | 8.76% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610845323 | A->T | INTERGENIC | None |