Detailed information of SNP:
|
SNP ID:
sf0610846754(Gbrowse)
Chromosome: chr06 Position: 10846754 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.43% | 44.57% |
| All Indica | 798 | 91.23% | 8.77% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610846754 | T->A | INTERGENIC | None |