Detailed information of SNP:
|
SNP ID:
sf0610848826(Gbrowse)
Chromosome: chr06 Position: 10848826 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1341 | 57.27% | 42.73% |
| All Indica | 735 | 27.21% | 72.79% |
| All Japonica | 490 | 96.94% | 3.06% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 337 | 23.74% | 76.26% |
| Indica II | 197 | 28.93% | 71.07% |
| Indica Intermediate | 201 | 31.34% | 68.66% |
| Temperate Japonica | 333 | 98.20% | 1.80% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 65 | 92.31% | 7.69% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 59.46% | 40.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610848826 | G->C | LOC_Os06g19080(LOC_Os06g19080.1) | SNPs that disrupt initiation codons |