Detailed information of SNP:
|
SNP ID:
sf0610851429(Gbrowse)
Chromosome: chr06 Position: 10851429 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1319 | 86.66% | 13.34% |
| All Indica | 714 | 75.91% | 24.09% |
| All Japonica | 486 | 99.59% | 0.41% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 327 | 70.34% | 29.66% |
| Indica II | 193 | 81.87% | 18.13% |
| Indica Intermediate | 194 | 79.38% | 20.62% |
| Temperate Japonica | 328 | 99.39% | 0.61% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610851429 | C->A | LOC_Os06g19080(LOC_Os06g19080.1) | SNPs that introduce stop codons |