Detailed information of SNP:
|
SNP ID:
sf0610851432(Gbrowse)
Chromosome: chr06 Position: 10851432 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 92.31% | 7.69% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 496 | 79.03% | 20.97% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 70.36% | 29.64% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610851432 | A->G | LOC_Os06g19080(LOC_Os06g19080.1) | Non-Synonymous SNP |