Detailed information of SNP:
|
SNP ID:
sf0610851583(Gbrowse)
Chromosome: chr06 Position: 10851583 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1203 | 96.26% | 3.74% |
| All Indica | 790 | 99.75% | 0.25% |
| All Japonica | 326 | 87.42% | 12.58% |
| Aus | 42 | 97.62% | 2.38% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 205 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 231 | 88.74% | 11.26% |
| Tropical Japonica | 58 | 87.93% | 12.07% |
| Japonica Intermediate | 37 | 78.38% | 21.62% |
| Group VI/Aromatic | 10 | 90.00% | 10.00% |
| Intermediate | 35 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610851583 | C->A | LOC_Os06g19080(LOC_Os06g19080.1) | Non-Synonymous SNP |