Detailed information of SNP:
|
SNP ID:
sf0610851695(Gbrowse)
Chromosome: chr06 Position: 10851695 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 84.20% | 15.80% |
| All Indica | 781 | 71.96% | 28.04% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 368 | 63.59% | 36.41% |
| Indica II | 206 | 81.55% | 18.45% |
| Indica Intermediate | 207 | 77.29% | 22.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610851695 | A->G | LOC_Os06g19080(LOC_Os06g19080.1) | Non-Synonymous SNP |