Detailed information of SNP:
|
SNP ID:
sf0610860017(Gbrowse)
Chromosome: chr06 Position: 10860017 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1278 | 88.26% | 11.74% |
| All Indica | 663 | 79.49% | 20.51% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 304 | 76.97% | 23.03% |
| Indica II | 182 | 78.02% | 21.98% |
| Indica Intermediate | 177 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610860017 | C->T | LOC_Os06g19090(LOC_Os06g19090.1) | Non-Synonymous SNP |