Detailed information of SNP:
|
SNP ID:
sf0610861202(Gbrowse)
Chromosome: chr06 Position: 10861202 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1350 | 87.04% | 12.96% |
| All Indica | 731 | 76.61% | 23.39% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 341 | 70.67% | 29.33% |
| Indica II | 193 | 83.42% | 16.58% |
| Indica Intermediate | 197 | 80.20% | 19.80% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610861202 | T->G | LOC_Os06g19090(LOC_Os06g19090.1) | INTRON |