Detailed information of SNP:
|
SNP ID:
sf0610864757(Gbrowse)
Chromosome: chr06 Position: 10864757 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 87.90% | 12.10% |
| All Indica | 785 | 78.85% | 21.15% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 84.32% | 15.68% |
| Indica II | 209 | 75.12% | 24.88% |
| Indica Intermediate | 206 | 72.82% | 27.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610864757 | T->C | LOC_Os06g19095(LOC_Os06g19095.1) | INTRON |