Detailed information of SNP:
|
SNP ID:
sf0610864810(Gbrowse)
Chromosome: chr06 Position: 10864810 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 84.66% | 15.34% |
| All Indica | 783 | 73.18% | 26.82% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 78.14% | 21.86% |
| Indica II | 210 | 70.00% | 30.00% |
| Indica Intermediate | 207 | 67.63% | 32.37% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610864810 | T->C | LOC_Os06g19095(LOC_Os06g19095.1) | INTRON |