Detailed information of SNP:
|
SNP ID:
sf0610865930(Gbrowse)
Chromosome: chr06 Position: 10865930 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 86.14% | 13.86% |
| All Indica | 765 | 75.16% | 24.84% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 72.98% | 27.02% |
| Indica II | 201 | 82.09% | 17.91% |
| Indica Intermediate | 205 | 72.20% | 27.80% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610865930 | G->A | LOC_Os06g19095(LOC_Os06g19095.1) | UTR_3_PRIME |