Detailed information of SNP:
|
SNP ID:
sf0610870476(Gbrowse)
Chromosome: chr06 Position: 10870476 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 55.02% | 44.98% |
| All Indica | 796 | 90.95% | 9.05% |
| All Japonica | 495 | 4.04% | 95.96% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 210 | 78.10% | 21.90% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610870476 | T->A | INTERGENIC | None |