Detailed information of SNP:
|
SNP ID:
sf0610870995(Gbrowse)
Chromosome: chr06 Position: 10870995 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 54.06% | 45.94% |
| All Indica | 799 | 89.11% | 10.89% |
| All Japonica | 496 | 4.03% | 95.97% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610870995 | A->G | LOC_Os06g19110(LOC_Os06g19110.1) | Non-Synonymous SNP |