Detailed information of SNP:
|
SNP ID:
sf0610871424(Gbrowse)
Chromosome: chr06 Position: 10871424 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 55.27% | 44.73% |
| All Indica | 797 | 91.22% | 8.78% |
| All Japonica | 495 | 4.04% | 95.96% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610871424 | T->C | LOC_Os06g19110(LOC_Os06g19110.1) | Non-Synonymous SNP |