Detailed information of SNP:
|
SNP ID:
sf0610871774(Gbrowse)
Chromosome: chr06 Position: 10871774 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 53.56% | 46.44% |
| All Indica | 799 | 87.73% | 12.27% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610871774 | A->G | LOC_Os06g19110(LOC_Os06g19110.1) | Synonymous |