Detailed information of SNP:
|
SNP ID:
sf0610871828(Gbrowse)
Chromosome: chr06 Position: 10871828 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 54.97% | 45.03% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610871828 | T->C | LOC_Os06g19110(LOC_Os06g19110.1) | Synonymous |