Detailed information of SNP:
|
SNP ID:
sf0610872346(Gbrowse)
Chromosome: chr06 Position: 10872346 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 55.46% | 44.54% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610872346 | C->G | LOC_Os06g19110(LOC_Os06g19110.1) | Non-Synonymous SNP |