Detailed information of SNP:
|
SNP ID:
sf0610872461(Gbrowse)
Chromosome: chr06 Position: 10872461 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 54.69% | 45.31% |
| All Indica | 799 | 89.74% | 10.26% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610872461 | T->C | LOC_Os06g19110(LOC_Os06g19110.1) | Synonymous |