Detailed information of SNP:
|
SNP ID:
sf0610872781(Gbrowse)
Chromosome: chr06 Position: 10872781 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 50.07% | 49.93% |
| All Indica | 786 | 82.82% | 17.18% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 368 | 92.93% | 7.07% |
| Indica II | 212 | 73.11% | 26.89% |
| Indica Intermediate | 206 | 74.76% | 25.24% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610872781 | T->C | LOC_Os06g19110(LOC_Os06g19110.1) | INTRON |