Detailed information of SNP:
|
SNP ID:
sf0610873579(Gbrowse)
Chromosome: chr06 Position: 10873579 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1175 | 96.26% | 3.74% |
| All Indica | 792 | 97.85% | 2.15% |
| All Japonica | 308 | 94.16% | 5.84% |
| Aus | 33 | 78.79% | 21.21% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 207 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 244 | 96.72% | 3.28% |
| Tropical Japonica | 35 | 82.86% | 17.14% |
| Japonica Intermediate | 29 | 86.21% | 13.79% |
| Group VI/Aromatic | 6 | 100.00% | 0.00% |
| Intermediate | 36 | 94.44% | 5.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610873579 | C->T | LOC_Os06g19110(LOC_Os06g19110.1) | Non-Synonymous SNP |