Detailed information of SNP:
|
SNP ID:
sf0610873934(Gbrowse)
Chromosome: chr06 Position: 10873934 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 53.61% | 46.39% |
| All Indica | 797 | 88.83% | 11.17% |
| All Japonica | 495 | 3.23% | 96.77% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610873934 | A->T | LOC_Os06g19110(LOC_Os06g19110.1) | Non-Synonymous SNP |