Detailed information of SNP:
|
SNP ID:
sf0610874180(Gbrowse)
Chromosome: chr06 Position: 10874180 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 63.33% | 36.67% |
| All Indica | 799 | 92.74% | 7.26% |
| All Japonica | 497 | 23.94% | 76.06% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 30.75% | 69.25% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610874180 | G->A | INTERGENIC | None |