Detailed information of SNP:
|
SNP ID:
sf0610877202(Gbrowse)
Chromosome: chr06 Position: 10877202 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 53.98% | 46.02% |
| All Indica | 799 | 80.48% | 19.52% |
| All Japonica | 497 | 19.92% | 80.08% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 65.73% | 34.27% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 24.78% | 75.22% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610877202 | T->C | INTERGENIC | None |