Detailed information of SNP:
|
SNP ID:
sf0610880039(Gbrowse)
Chromosome: chr06 Position: 10880039 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 53.46% | 46.54% |
| All Indica | 798 | 80.45% | 19.55% |
| All Japonica | 497 | 18.91% | 81.09% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 212 | 65.57% | 34.43% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 24.78% | 75.22% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610880039 | T->C | LOC_Os06g19130(LOC_Os06g19130.1) | SNPs that disrupt initiation codons |