Detailed information of SNP:
|
SNP ID:
sf0610883351(Gbrowse)
Chromosome: chr06 Position: 10883351 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 53.70% | 46.30% |
| All Indica | 799 | 22.65% | 77.35% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 10.40% | 89.60% |
| Indica II | 213 | 38.50% | 61.50% |
| Indica Intermediate | 211 | 28.44% | 71.56% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610883351 | A->G | LOC_Os06g19130(LOC_Os06g19130.1) | INTRON |