Detailed information of SNP:
|
SNP ID:
sf0610883531(Gbrowse)
Chromosome: chr06 Position: 10883531 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 92.53% | 7.47% |
| All Indica | 791 | 87.10% | 12.90% |
| All Japonica | 493 | 99.59% | 0.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 92.74% | 7.26% |
| Indica II | 210 | 77.62% | 22.38% |
| Indica Intermediate | 209 | 86.60% | 13.40% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610883531 | G->A | LOC_Os06g19130(LOC_Os06g19130.1) | INTRON |