Detailed information of SNP:
|
SNP ID:
sf0610885120(Gbrowse)
Chromosome: chr06 Position: 10885120 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 85.95% | 14.05% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 497 | 62.17% | 37.83% |
| Aus | 61 | 95.08% | 4.92% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 46.57% | 53.43% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610885120 | T->G | LOC_Os06g19130(LOC_Os06g19130.1) | INTRON |