Detailed information of SNP:
|
SNP ID:
sf0610885363(Gbrowse)
Chromosome: chr06 Position: 10885363 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 56.38% | 43.62% |
| All Indica | 799 | 25.41% | 74.59% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 10.67% | 89.33% |
| Indica II | 213 | 40.85% | 59.15% |
| Indica Intermediate | 211 | 36.02% | 63.98% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610885363 | A->G | LOC_Os06g19130(LOC_Os06g19130.1) | INTRON |