Detailed information of SNP:
|
SNP ID:
sf0610895565(Gbrowse)
Chromosome: chr06 Position: 10895565 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1293 | 60.94% | 39.06% |
| All Indica | 684 | 30.99% | 69.01% |
| All Japonica | 492 | 97.76% | 2.24% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 325 | 32.92% | 67.08% |
| Indica II | 179 | 35.20% | 64.80% |
| Indica Intermediate | 180 | 23.33% | 76.67% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 92 | 94.57% | 5.43% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610895565 | A->G | LOC_Os06g19150(LOC_Os06g19150.1) | INTRON |