Detailed information of SNP:
|
SNP ID:
sf0610900671(Gbrowse)
Chromosome: chr06 Position: 10900671 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 54.82% | 45.18% |
| All Indica | 794 | 92.95% | 7.05% |
| All Japonica | 493 | 3.04% | 96.96% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 373 | 97.32% | 2.68% |
| Indica II | 212 | 87.26% | 12.74% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 92 | 6.52% | 93.48% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610900671 | A->G | LOC_Os06g19160(LOC_Os06g19160.1) | INTRON |