Detailed information of SNP:
|
SNP ID:
sf0610902540(Gbrowse)
Chromosome: chr06 Position: 10902540 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 55.26% | 44.74% |
| All Indica | 788 | 23.98% | 76.02% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 10.40% | 89.60% |
| Indica II | 209 | 39.23% | 60.77% |
| Indica Intermediate | 204 | 33.33% | 66.67% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610902540 | A->G | LOC_Os06g19160(LOC_Os06g19160.1) | INTRON |