Detailed information of SNP:
|
SNP ID:
sf0610903920(Gbrowse)
Chromosome: chr06 Position: 10903920 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 95.00% | 5.00% |
| All Indica | 799 | 93.37% | 6.63% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610903920 | G->A | LOC_Os06g19160(LOC_Os06g19160.1) | INTRON |