Detailed information of SNP:
|
SNP ID:
sf0610908124(Gbrowse)
Chromosome: chr06 Position: 10908124 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 79.80% | 20.20% |
| All Indica | 791 | 84.83% | 15.17% |
| All Japonica | 497 | 71.23% | 28.77% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 372 | 92.20% | 7.80% |
| Indica II | 209 | 71.29% | 28.71% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 62.39% | 37.61% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610908124 | A->G | LOC_Os06g19160(LOC_Os06g19160.1) | Synonymous |