Detailed information of SNP:
|
SNP ID:
sf0610911712(Gbrowse)
Chromosome: chr06 Position: 10911712 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 82.71% | 17.29% |
| All Indica | 798 | 86.97% | 13.03% |
| All Japonica | 496 | 72.98% | 27.02% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 334 | 63.47% | 36.53% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610911712 | A->G | LOC_Os06g19170(LOC_Os06g19170.1) | Non-Synonymous SNP |